Acknowledgments

Ruslan Tazhigulov acknowledges support from the Molecular Sciences Software Institute under National Science Foundation grant ACI-1547580.

Ruslan Tazhigulov would like to thank Dr. Doaa Altarawy for valuable discussions during the development of eMap application.

Melissa Wei was supported under Boston University RISE Internship Program.

The website is hosted on Massachusetts Open Cloud with support from Rafik B. Hariri Institute for Computing and Computational Science & Engineering.
Third-Party Applications, Components, and Frameworks used:
Biopython
PDB parser 		Cock, P. J. A.; Antao, T.; Chang, J. T.; Chapman, B. A.; Cox, C. J.; Dalke, A.; Friedberg, I.; Hamelryck, T.; Kauff, F.; Wilczynski, B.; de Hoon, M. J. L. Bioinformatics, 2009, 25, 1422-1423.
Hamelryck, T.; Manderick, B. Bioinformatics, 2003, 19, 2308-2310.
DSSP

RSA 		Wolfgang, K.; Christian, S. Biopolymers, 1983, 22, 2577-2637.
Touw, W. G.; Baakman, C.; Black, J.; te Beek, T. A.; Krieger, E.; Joosten, R. P.; Vriend, G. Nucleic Acids Res., 2015, 43, D364-D368.
Tien, M. Z.; Meyer, A. G.; Sydykova, D. K.; Spielman, S. J.; Wilke, C. O. PLoS ONE, 2013, 8, 1-8.
MSMS
RD 		Sanner, M. F.; Olson, A. J.; Spehner, J. C. Biopolymers, 1996, 38, 305-320.
Chakravarty, S.; Varadarajan, R. Structure, 1999, 7, 723-732.
Song, J.; Tan, H.; Mahmood, K.; Law, R. H. P.; Buckle, A. M.; Webb, G. I.; Akutsu, T.; Whisstock, J. C. PLoS ONE, 2009, 4, 1-14.
NetworkX Hagberg, A. A.; Schult, D. A.; Swart, P. J. Exploring Network Structure, Dynamics, and Function using NetworkX. Pasadena, CA USA, 2008.
NGL Viewer Rose, A.; Hildebrand, P. Nucleic Acids Res., 2015, 43, W576-W579.
gSpan Mining X. Yan and J. Han. Proc. Int'l Conf. Data Mining, 2002.
MSA Viewer Yachdav G, Wilzbach S, Rauscher B, Sheridan R, Sillitoe I, Procter J, Lewis SE, Rost B, Goldberg T. Bioinformatics. 2016 32(22) 3501-3.
MUSCLE Edgar RC. Nucleic Acids Res. 2004 32(5) 1792-1797.
Bootstrap, Flask, Flask Table, jQuery, NumPy, PyGraphviz, RDKit, SciPy, Select2, ViewerJS, Celery, Redis, GraphViz, pysmiles